YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34784054, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKHVEVRMH ESHLEPIEAR PLSKWGTICQ KMRKNLLLTL TVMGVIMGAV SGMLLRVASP  60
   61 IDDNIVMVIA FPGDILMRML KMLILPLIIS SLITGLAGLD AKSSGRLGSR AMIYYMTTTV 120
  121 IAAVLGVILV LLIHPGNPKL KENLGEGLEN DEVSSLDAFF DLIRNLFPEN LVQACFQQIQ 180
  181 TVVKKVEVQP DLDDTNSTMS EYLSNATKPP PIFKDKKSLQ FKSGMNVLGL IGFFIAFGIC 240
  241 MGKMGEKARL MIDFFNILNE IVMKLVIMIM WYSPFGIACL ICGKIISIKD LEVVARQLGM 300
  301 YMITVIVGLI IHGAIFLPCI YFAIVRKNPF SFFMGIFQAW ITALGTASSA GTLPVTFRCL 360
  361 EENLGIDKRV TRFVLPVGAT INMDGTALYE AVAAIFIAQM NGIDLDPGQI VTVSLTATLA 420
  421 SVGAASIPSA GLVTMLLILT AVGLPTQDIS LLVAVDWLLD RFRTSVNVVG DSYGAGIVYH 480
  481 LSKAELDALD AQHGKTDDIE MMTKTQSYYD DLKNHHENNS NQCVFAAQNT GLVDDCKVTL 540
  541 AATNGSTAEI TVVEEEPWKN D

Type	Start	End	Confidence
Cytoplasmic	1	35	0.77
Transmembrane Helix	36	58	0.88
Non-Cytoplasmic	59	78	0.62
Transmembrane Helix	79	99	0.88
Cytoplasmic	100	110	0.57
Transmembrane Helix	111	134	0.89
Non-Cytoplasmic	135	222	0.59
Transmembrane Helix	223	245	0.83
Cytoplasmic	246	264	0.51
Transmembrane Helix	265	288	0.84
Non-Cytoplasmic	289	299	0.49
Transmembrane Helix	300	325	0.86
Cytoplasmic	326	331	0.45
Transmembrane Helix	332	357	0.76
Non-Cytoplasmic	358	414	0.47
Transmembrane Helix	415	444	0.72
Cytoplasmic	445	561	0.70