YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41387186, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAGQKVVL ITGCSSGIGL GIAVMLARDK QQRYYVIATM RDLKRQEKLV CAAGDTYGKT  60
   61 LTVCTLDVCS NESVRQCVDS VKDRHIDILI NNAGVGLVGP VEGLSLDDMM KVFETNFFGA 120
  121 VRMIKEVMPD MKKRRSGHII VISSVMGLQG VAFNDVYAAS KFAIEGFCES LAVQLLKFNV 180
  181 TMSMIEPGPV HTEFEMKMYD DVSKKEYPNT DPETMHHFRT CYLPTSVNIF QGLGQTPEDI 240
  241 AKVTKKVIES PRPPFRSLTN PLYTPIVALK YADDSGDLSL HTFYHMLYNL GGVMHVSVRI 300
  301 MKVLSFSWMR RRAVSPD

Type	Start	End	Confidence
Cytoplasmic	1	7	0.33
Transmembrane Helix	8	27	0.62
Non-Cytoplasmic	28	284	0.76
Transmembrane Helix	285	303	0.49
Cytoplasmic	304	317	0.52