YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EMC4_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSAGQGGG ALSTRGGAAT KRMKWAVELS LGNSRSRSDR QGKDGDVMYP VGYSDKPVPD  60
   61 TSVQEADRNL VEKRCWDVAL GPLKQIPMNL FIMYMSGNTI SIFPIMMVCM MAWRPIQALM 120
  121 SMSATFKLLE SSSQQWLQGL VYLIGNLLGS ALAIYKCQSM GLLPTHSSDW LAFIEPPQRL 180
  181 EIMGGGMVM

Type	Start	End	Confidence
Cytoplasmic	1	90	0.86
Transmembrane Helix	91	114	0.89
Non-Cytoplasmic	115	135	0.79
Transmembrane Helix	136	157	0.83
Cytoplasmic	158	189	0.83