YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41054948, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVGVSMLS RGQLPSASSN SSPTELQAQG CSNGDFMGSF GIFLQGLLGV VAFSTLMLKR  60
   61 FREPKHERRP WKIWFLDTSK QAIGMLFIHF ANVYLSDLTK EDPCSLYLIN FLLDATLGML 120
  121 VIYGGVKAIS VVVEWRQWDS LRFGEYGEPV QCTAWAGQCA LYILIMIFEK VMIILVLLIP 180
  181 QWKKLATLNP LKNPKLELAI VMLIVPFFVN ALMFWVVDNF LMKKGRTKAK LEERVAEDDP 240
  241 RGNSKVRYRR ALSHDDSESE ILFSADDEME DSEGDDDVRR ITGLKPVKKK KHRLGIPV

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.97
Transmembrane Helix	37	58	0.89
Cytoplasmic	59	72	0.89
Transmembrane Helix	73	93	0.77
Non-Cytoplasmic	94	110	0.69
Transmembrane Helix	111	131	0.82
Cytoplasmic	132	158	0.77
Transmembrane Helix	159	179	0.87
Non-Cytoplasmic	180	197	0.83
Transmembrane Helix	198	217	0.96
Cytoplasmic	218	298	0.90