YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41053413, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRKRSPLVI CGAFIFVAWN VVLLFVLMRR PSSPGTFNNQ DKPGETEHRA EGGKFGNIMN  60
   61 EVIRVADAFE AELAAQKKIL QQIQSHWSVW DSKDGVIPEK SKSEVEHTAP VVIPILVIAC 120
  121 NRVTVKRCLD KLIEHRPSAE LHPIIVSQDC GHRETSDVIG SYGSQLTHIK QPDLSDVAVP 180
  181 PQHKKFQGYY KISRHYKWAL SQVFNTFSYS SVVVVEDDLE VAPDFFEYFR ALHPMLKSDP 240
  241 TLWCVSAWND NGRDGFVDPG KASLLYRTDF FPGLGWMLTK DLWAELEPKW PASFWDDWMR 300
  301 HPDQRKDRSC IRPEISRTLT FGRKGVSLGQ FYDKYLRFIK LNTEFVPFTK MDLSYLEKEK 360
  361 YDESFEKEVY AASLVTLEDL KSGKLSGSGP FRVQYSSPDS FKSLARNLGV MDDLKSGVPR 420
  421 AGYRGAVSFL LRGKRVYLAP PAGWSRYDPS WS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.86
Transmembrane Helix	8	28	0.89
Non-Cytoplasmic	29	452	0.99