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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: S39AA_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRVHTHTRL CFLCVLTLLY HQCSHCHEGG SHHHHGHNHG DHDHIHSDLQ ISEMSCNGLS  60
   61 DRLVHGSQGE PAENEQRYYI HQLFCRYGQK DRLDFKGFQS LLLSLGLGEV RVVGLEHEEL 120
  121 GHDHVAHLDI LEVQDGRHSH SAGHPHSHQN PNISHKTHQH SHHENEEHTL AEDVPCSKTL 180
  181 GTGATPPSVS EEHDHDHEHD HDHDKDSDHE HNHRHVTDSP QTQDHEHDHI HLHTHSHKQD 240
  241 SDVTQRLELD HDQKSREHAQ EHNDLSDQNH HHHDHHHHKH PHPHLHAPES VVHTTSAMPK 300
  301 IQPSVPPELP ANQTRRHRRP SKVKAHRGRN RTSVTVTQAV ELETSGDDHE HSLQDHSPAQ 360
  361 QQRGRREVPG SPAHGVLHQH EECLNLTQLL HQYGLSSDSL ISPVQFTYLC PALLYQIDRR 420
  421 FCILHYHHVE AEEQVAPSSG WVWMWGFVSI TIISLLSLLG VVLVPILNQS CFKFLLTFLV 480
  481 ALAVGTLSGD ALLHLLPHSQ GDHDHNHGEQ MEEEPEVDFL IKFDGVWKGL TALAGIYLLF 540
  541 IIEHCIGMFK HYSDQRGGLC HKKKKGEQAK IGRKLSDHKL NRRSDAEWLH LKPLTEGDGT 600
  601 TCEAGHNDTQ MTELQPLDSP SKMPLNISDS DHPYEAPVKT EEDNVPKAKS KKHGHGHGHG 660
  661 HGHGHGHSHH GHCHSDQEMK DAGIASIAWM VIMGDGMHNF SDGLAIGAAF SANITGGIST 720
  721 SVAVFCHELP HELGDFAVLL KAGMSVKQAI VYNLLSALMA YAGMVIGTAV GQYTHNVTSW 780
  781 IFAVTAGMFL YVALVDMLPE MLHGDSEEHK RCEMGHFVLQ NFGMLTGFGI MLLIAIFEDH 840
  841 IVLDFGF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle