YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28277949, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALMMRVAP GPFASVRVNR PVLHCAASAL IRSVSVSAAA SQALPERVKI VEVGPRDGLQ  60
   61 NEKTIVPTEV KIRLIDMLSE AGLPVIEATS FVSPKWVPQM ADQEEVMRGL HKKPGVNYPV 120
  121 LTPNLKGFQA AVKAGAKEVA IFGAASELFS KKNINCSVEE SLVRFEEVMT AAKQEGVSVR 180
  181 GYVSCVLGCP YEGKVSPSKV AEVAKRLYSM GCYEVSLGDT IGVGTPGGMT EMLNAVKKEL 240
  241 PVEALAVHCH DTYGQALANI LVALQNGVSV VDSSVAGLGG CPYAQGASGN VATEDVVYML 300
  301 HGLGIHTGVD LPRLLDAGSF ICHSINRRTN SKVAQASCKL

Type	Start	End	Confidence
Signal Peptide	1	38	0.97
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	340	0.99