YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45387715, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGANEEKKEK CGTICLKYLL FTFNFLFWLA GVAVMAVGIW TVIEKSDYIS LLSSKIYAVS  60
   61 AYILIMAGVI VMITGVLGCC ATFKEQRRLL RVYFVLLLCI FLLEILAGVL AYIYYQQLND 120
  121 ELKENLRETM VQKYNQSEQE HVTKAVDKLQ QEFKCCGSNS SSDWVDSAWI RSSEADGRLV 180
  181 PDSCCKSPVR KFCGRRDHPS NIYKVEGGCI TKLENFILNH LQIIGAVGVG VASVQIVGMF 240
  241 FTCCLYRSLK SEPY

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	43	0.89
Non-Cytoplasmic	44	58	0.94
Transmembrane Helix	59	81	0.92
Cytoplasmic	82	91	0.82
Transmembrane Helix	92	114	0.93
Non-Cytoplasmic	115	222	0.99
Transmembrane Helix	223	246	0.85
Cytoplasmic	247	254	0.88