YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46309551, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWNFLGGI LEEVHIHSTM VGKIWLTILF IFRMLVLGVA AEDVWNDEQS DFICNTEQPG  60
   61 CRNVCYDQAF PVSLIRYWVL QVIFVSSPSL VYMGHAIYKL RALEKQRHCQ RVTLRRELET 120
  121 VEPELMETRR RIERELRQLE QGKLNKAPLR GSLLRTYLAH VLTRCVLEVC FMMCQYLLYG 180
  181 HRLQPLYKCD RQPCPNVVDC FVSRPTEKSL FMVFMQGIAA VSLFLSLLEL LHLAYKKLKK 240
  241 GLRDHCPALR DGPADSSAPN RNSVGQQARK ATMPMALSGY TALLEKQGNG PTYPSIIHPL 300
  301 SAFVPIQGPS APDMENRDAL RSPLEHNSSN NTSSGSRSPL VQERGPAASP SDYHTLPQTD 360
  361 SLPLIATLPL TDPLPQMDLF PLRDASSCPA VLHKQRRVSP PWNCSTVMES TGSDSGDSSS 420
  421 GGLSQGRRTR CGRSVSRSDL RLTPDSQPHC AAESPSLSPQ RQRPAIGSSR RADLQI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	41	0.89
Non-Cytoplasmic	42	76	0.94
Transmembrane Helix	77	98	0.89
Cytoplasmic	99	159	0.94
Transmembrane Helix	160	179	0.78
Non-Cytoplasmic	180	211	0.84
Transmembrane Helix	212	233	0.90
Cytoplasmic	234	476	0.84