YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|123998948, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSLIDTFI YAFAHVCLLS CIAQTGQTQR QGNTGAAALR QTIQWQHNGK LFSILSQGSE  60
   61 YQPPLKRDGN KEQAQARPVA IVRNDDAATR TDSSAPSRAS QSRGSVRVPS GTGARGGASR 120
  121 WLSGDGARTR GVHGRRNHTD PLRSINGTDR PAGDDEVMVG DDPYNPYKST DPDNPYYNYY 180
  181 DTYERPRPAQ RPGYGTGYFQ NGLPDLVGDP YYIQASTYVQ RVPMYNLRCA AEENCLASSA 240
  241 YRSSVRDYDM RMLLRFPQRV KNQGTSDFLP SRPRYTWEWH SCHQHYHSMD EFSHYDLLDA 300
  301 TTHRRVAEGH KASFCLEDTS CDYGYYRRYA CTSHTQGLSP GCYDTYNADI DCQWIDITDV 360
  361 KPGNYILKVS VNPSYQVPES DYSNNVVRCD VRYTGNYAYV SGCHISQY

Type	Start	End	Confidence
Signal Peptide	1	23	0.83
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	408	0.99