YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HSDL2_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQNTGKLAG CTIFITGASR GIGKAIALKA AQDGANVVIA AKTADPHPKL PGTIYTAAAE  60
   61 IEAAGGKALP CIVDVRDEKQ INDAVEQAVE KFGGIDILVN NASAINLTGT LQTPMKKADL 120
  121 MLGINLRGTY LTSKLCIPHL LKSKNPHILN LSPPLNLNPI WFKNHTAYTI AKYGMSMCVL 180
  181 GMAEEFRGSI AVNALWPKTA IQTAAMDMLG GSEVGKQCRK VEIMADAAYA IFKQPTSFTG 240
  241 QFVIDEDILK KEGIKDFDVY AVEPGHPLLP DFFLDGQPED LVKHMEAHGA TPAFTTAKAD 300
  301 PVAAGPVSEM FNTIRGIISP EMVKTTQGVY KFNLAGEHAG VWYLDLKNDA GSAGNGEPPV 360
  361 KADVVMSMDS EDFVKMFGGK LKPTMAFMSG KLTIKGDMGL AIKLEKMMAM MKSKL

Type	Start	End	Confidence
Signal Peptide	1	21	0.69
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	415	0.99