YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41054549, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSNNTTVTD CGTSHFRYPL FTSTYTVVLL FALPLNCVSL WILVCRNGLK KSVPVIYMAN  60
   61 LALSDLLFTL SLPFRIIYFA TGKWTLGNTL CMIPGTLFAV NIYSSSFFIM LISVDRMLAV 120
  121 VYPLRSRSLR TAPVAWMFCA LVWLLIAGLA VPIAQNHPEI NDTACNITRC FEKYSTDSWN 180
  181 NGFKLICLAT FFGMLVPFSI ILGCTVAVVR QLRGYSMATS SFNAELSKSK IVKLFLSNLL 240
  241 IYTICFIPFH VIYILFTLVK LEMLHNGSHL EVYFNLHNIT LCLASTNSCL DPLIYYFSAK 300
  301 NIQSRSRCGS ASKTVGLGLV QSTSWTGQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	21	0.96
Transmembrane Helix	22	45	0.90
Cytoplasmic	46	55	0.86
Transmembrane Helix	56	77	0.90
Non-Cytoplasmic	78	91	0.80
Transmembrane Helix	92	114	0.86
Cytoplasmic	115	131	0.88
Transmembrane Helix	132	154	0.90
Non-Cytoplasmic	155	185	0.97
Transmembrane Helix	186	209	0.91
Cytoplasmic	210	233	0.92
Transmembrane Helix	234	256	0.89
Non-Cytoplasmic	257	275	0.90
Transmembrane Helix	276	297	0.76
Cytoplasmic	298	328	0.77