YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DH12B_DANRE
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPFADALFW VGAVTVLWLS VSSLWSLING IRVWILGNGN LMRASSLGKW AVVTGATDGI  60
   61 GKAYAEELAR RGFAIVLISR TQEKLDEVSK AIESKYKVET KTISADFGSV DIYPKIESGL 120
  121 AGLEIGVLVN NVGVSYSYPE FFLNIPDVDS FINNMININI MSVCQMTRLV LPRMVDRSKG 180
  181 VILNVASASG MYPVPLLTLY SSTKAFVDFF SRGLDAEYKS KGIIIQSVLP FYVTTKLSKI 240
  241 RKPTLDIPTP ERYVKAQLST IGLQTQSNGY LPHAIMGWVT ASLLPAKLLN KYVMGMGLSQ 300
  301 RARYLKKQKQ G

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.69
Transmembrane Helix	7	33	0.72
Cytoplasmic	34	179	0.71
Transmembrane Helix	180	200	0.65
Non-Cytoplasmic	201	273	0.83
Transmembrane Helix	274	291	0.62
Cytoplasmic	292	311	0.70