YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32822918, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGDGSQATS GSPNDSQHDP GKMFIGGLSW QTSPDSLRDY FSKFGEIREC MVMRDPTTKR  60
   61 SRGFGFVTFA DAASVDKVLA QPHHELDSKT IDPKVAFPRR AQPKMVTRTK KIFVGGLSAN 120
  121 TVVEDVKQYF EQFGKVEDAM LMFDKTTNRH RGFGFVTFEN EDVVEKVCEI HFHEINNKMV 180
  181 ECKKAQPKEV MFPPGTRGRA RGLPYTMDAF MLGMGMLSYP NIVATYGRGY TGFAPSYSYQ 240
  241 FPGFPATAYG PVAAAAAVAA ARGSGRGARG RGGYAAYPQS TGPGFPDYGF YSSPSDQRGP 300
  301 PFSFADYGSL GPQAAQLLQS EHATSACNSP LQHLASPDQY KSPGTNPPRP GAFPGASSPG 360
  361 PVADLYGPTS QDSGVGNYIS AASPQPGSGF GHSIAGPLIA TAFTNGYH

Type	Start	End	Confidence
Cytoplasmic	1	204	0.94
Transmembrane Helix	205	224	0.86
Non-Cytoplasmic	225	242	0.84
Transmembrane Helix	243	263	0.86
Cytoplasmic	264	408	0.91