YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32766677, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.95
Transmembrane Helix	64	87	0.85
Non-Cytoplasmic	88	98	0.87
Transmembrane Helix	99	123	0.77
Cytoplasmic	124	131	0.87
Transmembrane Helix	132	151	0.87
Non-Cytoplasmic	152	164	0.74
Transmembrane Helix	165	186	0.88
Cytoplasmic	187	198	0.75
Transmembrane Helix	199	224	0.67
Non-Cytoplasmic	225	248	0.82
Transmembrane Helix	249	267	0.93
Cytoplasmic	268	297	0.89
Transmembrane Helix	298	321	0.77
Non-Cytoplasmic	322	338	0.85
Transmembrane Helix	339	361	0.85
Cytoplasmic	362	372	0.82
Transmembrane Helix	373	392	0.91
Non-Cytoplasmic	393	401	0.84
Transmembrane Helix	402	424	0.83
Cytoplasmic	425	437	0.65
Transmembrane Helix	438	456	0.82
Non-Cytoplasmic	457	502	0.93
Transmembrane Helix	503	522	0.95
Cytoplasmic	523	543	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSESLTHK NGRQRKPVLL NSDMGERESK LEVGGDEEAL LPNSDRADGR TQTHKGIKGE  60
   61 LGNVSLLLFL YVLQGIPLGL AGSIPLIMQS KNVSYKDQAY FSFVFWPFSL KLFWAPLVDS 120
  121 VYLKQFGRRK SWLVPTQYLL GLFMLYLSLT VDSMLQTDGQ KGPDVITLTA VFFLLAFLAA 180
  181 TQDIAVDGWA LTMLSRENVG YASTCNSVGQ TAGYFLGNVL FLALESADFC NKYLRFEPQE 240
  241 RGIVTLSDFL FFWGIVFMVS TTLVAVLKKE NGKPHPAKKK PKEETQGVKE TYKLLFSIIK 300
  301 MPTVFTFCAL LLTAKVGFSA ADAVTGLKLV EAGVPKEQLA LLAVPMVPLQ ILLPLVISKY 360
  361 TAGPRPLDIF YKAFPFRLLI GLEYALLVWW TPSVRQEEGF PVYYYAVVLL SYAVHQVALY 420
  421 SMYVACMAFH AKVSDPVIGG TYMTLLNTVT NLGGNWPSTL ALWLVDPLTS KECHGAPGQT 480
  481 CSSIEEAGLC VREGGSCVTS LDGYYVESVV CVLIGLCWWI FFGKRMKRLQ EESPSAWHCR 540
  541 VAK