YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182891694, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQRSGYQQ LTNEEESAEG FQQTADAPPP YSSLGASNAA FFEYKEDEVY PKPPSYNVAT  60
   61 SLPSYDEAER SKAEATVPLV TDRDEDFIAR DSFEDTDQLR VGNDGIFMLT FFMAFLFNWI 120
  121 GFFLSFCLTT SAAGRYGAIS GFGLSLVKWV LIVRFSTYFP GYFDGQYWLW WVFLVVGFLL 180
  181 FFRGFVNYSR DRNMADHSMS TLPRTRVLFI Y

Type	Start	End	Confidence
Cytoplasmic	1	105	0.53
Transmembrane Helix	106	139	0.72
Non-Cytoplasmic	140	166	0.61
Transmembrane Helix	167	186	0.95
Cytoplasmic	187	211	0.89