YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERGI3_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALNKLKQF DAYPKTLEDF RIKTCGGATV TIISGLIMLI LFFSELQYYL TKEVHPELFV  60
   61 DTSRGDKLRI NIDVIFPHMP CAYLSIDAMD VAGEQQLDVE HNLFKQRLDK DGQPVTTEAE 120
  121 KHDLGKEEEG VFDPSTLDPD RCESCYGAET DDLKCCNTCD DVREAYRRRG WAFKTPDTIE 180
  181 QCKREGFSQK MQEQKNEGCQ VYGFLEVNKV AGNFHFAPGK SFQQSHVHVH DLQSFGLDNI 240
  241 NMTHFIKHLS FGKDYPGIVN PLDDTNVAAP QASMMYQYFV KIVPTIYVKG DGEVVKTNQF 300
  301 SVTRHEKIAN GLIGDQGLPG VFVLYELSPM MVKFTEKQRS FTHFLTGVCA IIGGVFTVAG 360
  361 LIDSLIYHSA RAIQKKIELG KAS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	43	0.84
Non-Cytoplasmic	44	343	0.95
Transmembrane Helix	344	367	0.89
Cytoplasmic	368	383	0.90