YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41055999, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLKLKFPF QKRVRLAQGL WLLSWVAMFS GAVTFATGVF LKTELHRRSE VMHSMDIHIV  60
   61 PNLLMVVGLA SVGINICAGK VCQDSLDPSR FPRWKTLLLP FFCLSVFFTS LLLVAMILSY 120
  121 ALQPSLEESL KIGLKNGIRF YKDTDTPGRC FQKETIDRPQ IEFQCCGNTN YRDWFEVQWI 180
  181 SNRYLDFTSK EVKDRVRSNV DGRYLLDGVP FSCCNPASPR PCIQYSLLDN NAHYNYEYQS 240
  241 EELNLYNRGC RQALVSYYMG LMNTIGPCVL LVFLLQMAIL VGLRYLQTAM EGVLGQENVE 300
  301 IETEGYILEK GVKETLLETK EKMMKLLQFA QVGDASAETP GSEPEAEKPA TA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.91
Transmembrane Helix	21	41	0.94
Non-Cytoplasmic	42	56	0.94
Transmembrane Helix	57	79	0.89
Cytoplasmic	80	96	0.90
Transmembrane Helix	97	120	0.92
Non-Cytoplasmic	121	260	0.96
Transmembrane Helix	261	283	0.61
Cytoplasmic	284	352	0.70