YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TGT_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVKAVSSA APLALRIVAE CPVSKARACS LTLPHCAVNT PVFMPVGTQG TMKGITADQL  60
   61 EDLDCQICLG NTYHLGMRPG PDLIEKANGL HGFMKWRRNL LTDSGGFQMV SLVELSEVTE 120
  121 EGVTFRSPYD GKEILLTPEQ SIAIQNSLGS DIMMQLDDVV SSTVKGPRVE EAMHRSVRWL 180
  181 DRCIAANKNP DRQNLFAIIQ GGLDAELRKA CLKEMTKRDV PGFAIGGLGG GEEKDDFWKM 240
  241 VTLSTDHLPR EKPRYLMGVG YAVDLVVCVA LGCDMFDCVF PTRTARFGSA LVPWGSLQLK 300
  301 QKQYAKDFQP IDPDCQCPTC RRHSRAYLHA LFKSDTAAMH HITIHNISYQ LSLMRSVRQS 360
  361 IIDQRFPEFV KEFMKRMFPS SSQYPSWAVE ALQSVNICLS

Type	Start	End	Confidence
Signal Peptide	1	19	0.88
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	400	0.98