YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41055835, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLYHSPVPQ SGVAASALGL SGSSLIYVYG GEVGGIIPAL GFASGRQEPP QKPPYSYIAL  60
   61 IAMAIKNAPD KRATLSGIYQ FIMDRFPYYH DNKQGWQNSI RHNLSLNDCF IKVPREKGRP 120
  121 GKGSYWTLDT KCLDMFENGN YRRRKRKCRT QDTGDTKVGH KRTRVTSFKL HQGAQSEKVS 180
  181 PLKQNPGRDI KEKSNDTQPQ NEEENVASES AKDWCLASST TIVSLPRCTT PERSSTVSTV 240
  241 AVNTHTPLSS ASETRVPVKS DTGRAQSGDA KSKESNPRKT TDKAKEFSID SILSKKENQF 300
  301 QRRCAAAGGA SVDSRGYALA SSLIAHAHPQ LYPRGFPLCS YLSLTCPDKI LSLTEKTDEK 360
  361 LFF

Type	Start	End	Confidence
Signal Peptide	1	25	0.61
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	363	0.94