YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SGMR1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIRTILKL VVVVGFLSLT VQFIRHWMAN KQYVFTKEEV AKLAKQYAGQ DHEQAFSKVV  60
   61 VELRRRYPGH ILPDEDLQWV FVNAGGWMGS MCLLHASLTE YVLLFGTAVD TGGHSGRYWA 120
  121 EISDTIISGT FRQWKEGTTK SETYYPGDTI VHSAGEATSV QWSSGTWMVE YGRGFIPSTL 180
  181 GFALADTMFS TQDFLTLFYT ARVYVKGMIL EASTFLTESG VL

Type	Start	End	Confidence
Cytoplasmic	1	6	0.64
Transmembrane Helix	7	26	0.69
Non-Cytoplasmic	27	86	0.87
Transmembrane Helix	87	105	0.46
Cytoplasmic	106	222	0.49