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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|41055728, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENAHTKSVE EVYSNFSVNE STGLTLDQVK RNRDKWGPNE LPAEEGKSIW ELVIEQFEDL  60
   61 LVRILLLAAC ISFVLAWFEE GEETITAFVE PFVILLILIA NAIVGVWQER NAENAIEALK 120
  121 EYEPEMGKVY RQDRKSVQRI KAKDIVPGDI VEVAVGDKVP ADIRISAIKS TTLRVDQSIL 180
  181 TGESVSVIKH TDPVPDPRAV NQDKKNMLFS GTNIAAGKAI GVVVATGVNT EIGKIRDEMA 240
  241 STEQERTPLQ QKLDEFGEQL SKVISLICIA VWIINIGHFN DPVHGGSWIR GAVYYFKIAV 300
  301 ALAVAAIPEG LPAVITTCLA LGTRRMAKKN AIVRSLPSVE TLGCTSVICS DKTGTLTTNQ 360
  361 MSVCRMFIID KAEGENCSLT EFTISGSTYA PEGDVCLDNR IVKCSQYDGL VELATICALC 420
  421 NDSSLDFNES KGVYEKVGEA TETALTCLVE KMNVFDTDVR NLSKIERANA CNAVIKQLMK 480
  481 KEFTLEFSRD RKSMSVYCSP NKAKSSSSKM FVKGAPEGVI DRCAYVRVGG SKVPLTQGIK 540
  541 DKIMSVIREY GTGRDTLRCL ALATRDNPLK KEEMVLSDTA RFADYESDLT FVGCVGMLDP 600
  601 PRTEVAASIK LCRHAGIRVI MITGDNKGTA VAICRRIGIF SDDDDVHRMA FTGREFDDLS 660
  661 PHAQREAVTV ARCFARVEPS HKSKIVEFLQ GFDEITAMTG DGVNDAPALK KAEIGIAMGS 720
  721 GTAVAKTASE MVLADDNFST IVAAVEEGRA IYNNMKQFIR YLISSNVGEV VCIFLTAALG 780
  781 FPEALIPVQL LWVNLVTDGL PATALGFNPP DLDIMNKPPR SAKEPLISGW LFFRYLAIGC 840
  841 YVGAATVGAA AWWFIVADDG PMITLYQLSH FLQCSPDNPD FQDLECHVFE SPYPMTMALS 900
  901 VLVTIEMCNA LNSLSENQSL VRMPPWENIW LLGAICLSMS LHFLILYVEP LPVIFQITPL 960
  961 NVTQWMMVLK ISLPVILLDE LLKFVARTYL EPAPED

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle