YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182891532, gi...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKWRRLMRL SNRSLMAFIF FFSMSTTCLY FIYVAPGIVN TYFFMVQAQG IMLRDNVRTI  60
   61 GHMIRLYTNK NSTLNGTDYP DGSNSSEYIA QPTTYLPENF TYAQNLPCPE RLPSMKGQME 120
  121 VNMTEVPMEE IELRLKHMDI QFGGHWKPKD CKPRWKVAIL IPFRNRHERL PILFQHLTPM 180
  181 LQRQRLQFAF YVIEQTGTQP FNRAMLFNVG FKEAMKDLDW DCVVFHDVDH IPENDRNYYG 240
  241 CGQMPRHFAA KLDKYMYILP YNEFFGGVSG LTVEQFLKIN GFPNAFWGWG GEDDDLWNRV 300
  301 HYAGFNVTRP EGDIGKYKSI PHHHRGEVQF LGRYKLLRYS KERQHLDGLN NLQYSPEISL 360
  361 SNLYKNITVN LNPELALIAE Y

Type	Start	End	Confidence
Cytoplasmic	1	14	0.85
Transmembrane Helix	15	37	0.80
Non-Cytoplasmic	38	381	0.96