YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM38A_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVLDVLNLG EIAQYFSKMA MFPVFDVAYY IVSILYLKYE PGAVEVSRRS PVASWLCAML  60
   61 YCFGSYILAD IMLGVCPIDY FHNNSHILLA SAVWYLIFFC PLNLFYKCVA FMPVKLVLVA 120
  121 LKEVVRTRKI AAGVHHAHHA YHHGWLIMVI TGYVKGSGVA LMSNFEQLLR GVWKPETNEV 180
  181 LNMSFPTKAS LYGAILFTLQ EAHVLPVSKS TLICLFTLFM VSSKVFMTAR HSHGSPFALI 240
  241 ESWVCHVLFG SPLGTEDAHD HHHAAPAAAP APLSPAKNKE ELSEGTRKRK SKKAE

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.61
Transmembrane Helix	19	37	0.66
Cytoplasmic	38	51	0.89
Transmembrane Helix	52	74	0.86
Non-Cytoplasmic	75	86	0.76
Transmembrane Helix	87	106	0.86
Cytoplasmic	107	140	0.80
Transmembrane Helix	141	162	0.72
Non-Cytoplasmic	163	204	0.74
Transmembrane Helix	205	226	0.70
Cytoplasmic	227	295	0.74