YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41053623, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALHLLLIL GSVISIVSTD NESMVVAGGL IITTSVVLVS VVIYFTTQPE PLRTFNPAGL  60
   61 KSDLGQALFG QHIVSDVVLK AVSSFMADSN PNKPLVLSFH GTAGTGKNHV SKIIARNLYT 120
  121 KGENSKHVHT FIYDNQDPNA YSVWLKQFIH TSVENFPRST FIFDEMDKMQ PQVIDVIKPF 180
  181 LDYNAHVNGV SFHKAIFIFL SNTGGKVIAD LALDFWREGR KREEIKMHSR DLEIMISESI 240
  241 SKNEKSGFWH SSLIEHHLID HFIPFLPLEL RHVRQCVLAE MYYLNKTLDA HLADKVARDM 300
  301 PFFPKIHRVF AEKGCKSVRQ KLALYVDE

Type	Start	End	Confidence
Signal Peptide	1	19	0.86
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	328	0.97