YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41055299, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLIGRVRS AFRSRPDSWH LSDAAAFDFS EDLQEEESPR FSRLQVVVSG EAEERPAVNG  60
   61 SARSTLTDDD DSLLGASTGS TGPEACDGCQ RNREQQRRRR VMRKLGGAAV LYFLFMVGEL 120
  121 IGGYVANSLA IMTDALHMLT DLIGIIVSLL ALWLSAKPPT YRFTFGLHRL EVLSAGISVL 180
  181 LIYILTGVLL NEAAQRTIHQ DFTIDGDVML ITAAVGVAVN LLMGFLLNQS GHLHSHGHGH 240
  241 GHSHGSAGHG SSDQGSSGQG QRGHGSLAVR AAFIHALGDL VQSVGVLIAA YIVRFKHIPD 300
  301 HQRHRHHPAG GCTASHGRVG HQSRAAEAAA CGVCGGAEAV GADGR

Type	Start	End	Confidence
Cytoplasmic	1	104	0.98
Transmembrane Helix	105	126	0.90
Non-Cytoplasmic	127	134	0.81
Transmembrane Helix	135	156	0.89
Cytoplasmic	157	169	0.79
Transmembrane Helix	170	190	0.87
Non-Cytoplasmic	191	207	0.85
Transmembrane Helix	208	227	0.92
Cytoplasmic	228	271	0.88
Transmembrane Helix	272	293	0.59
Non-Cytoplasmic	294	345	0.54