YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41055317, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVFDRGVQM LLTTVGAFAA FSLMTIAVGT DYWLYSRGVC KIKTNNENET SKKNEEVMTH  60
   61 SGLWRTCCLE GNFKGLCKQI DHFPEDTDYE ADASEYFLRA VRASSIFPIL SVILLFMGGL 120
  121 CIAASEFYKS RHNIILSAGI LFVSAGLSNI IGMIVYISAN AGDPSKSDSK KNSYSYGWSF 180
  181 YFGALSFIMA EMVGVLAVHM FIDRHRELRA GARAADYLQG SAITRIPSYR YRYRRRSRSS 240
  241 SRSTDPSHSR DASPVGLKGF GALPSTEISM YTLTRGGDTL KGGHGTPTAT YNSERDHNFL 300
  301 QVHNCIQKDL KDSSNTANRR TTPV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.89
Transmembrane Helix	8	29	0.89
Non-Cytoplasmic	30	104	0.91
Transmembrane Helix	105	124	0.95
Cytoplasmic	125	133	0.76
Transmembrane Helix	134	157	0.91
Non-Cytoplasmic	158	179	0.87
Transmembrane Helix	180	202	0.92
Cytoplasmic	203	324	0.94