YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERD23_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIFRLSGDV CHLIAIIILF LKIWRSKSCA GISGKSQVLF ALVFTTRYLD LFTSYISAYN  60
   61 TVMKVVYLLL AYSTVGLIFF RFRNSYDSES DSFRVEFLLV PVAGLSFLEN YAFTPLEILW 120
  121 TFSIYLESVA ILPQLFMITK TGEAESITAH YLLFLGLYRA LYLANWLWRF HTEGFYDQIA 180
  181 VVSGVVQTIF YCDFFYLYFT RVLRGSGKMS LPMPV

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.57
Transmembrane Helix	6	24	0.71
Cytoplasmic	25	35	0.56
Transmembrane Helix	36	51	0.67
Non-Cytoplasmic	52	62	0.59
Transmembrane Helix	63	82	0.89
Cytoplasmic	83	92	0.78
Transmembrane Helix	93	113	0.79
Non-Cytoplasmic	114	117	0.80
Transmembrane Helix	118	138	0.86
Cytoplasmic	139	146	0.85
Transmembrane Helix	147	168	0.86
Non-Cytoplasmic	169	178	0.78
Transmembrane Helix	179	199	0.93
Cytoplasmic	200	215	0.90