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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|182890884, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYTGLFITL LSFVYTWESL EALPHVMRYD VVRLQALRGR TRRSASSLQK YPEQLEYDVA  60
   61 IDGRNLTISL HRNRELLGKQ YTLTHYGEDG ISETKSSNKF NHCYYHGHIH NFEDSSVSVG 120
  121 LCSGMEGFLR VNDQVYLIEP LEESLDGDHA IYKQEHLRTK RGAYGYINDT VYDLGPKSSG 180
  181 LYKGKNMRNK APRGGQQIVE MVLVVDNTEY KKFGSFKKIE ERMMLVANHV DKLYRPLNIR 240
  241 VMLVGLEVWS QRDLIDVSSR PNLTLERFLK WRRDSLLQRK KHDNAHFITG IDFEGSTVGL 300
  301 ATLYAMCSSS SSGAVNEDHN SNPIAVASTV AHEMGHNLGM SHDDSSCGCS SNKGCIMGDT 360
  361 IGSIYPDSFS TCSQSSLKAF LENYDTNCLI DVPNEGQIYG GPVCGNAFVE KGEECDCGTV 420
  421 EECNNPCCNA TTCRLTEGAR CAHGECCHNC QLKHTGSLCR KSAHDCDLDE YCTGESAFCP 480
  481 EDDYKMNGLP CNYNQGYCYN GQCPTHKEHC KMLWGSGADV DDDACFQYNV IDRTSKSAEH 540
  541 RKCGRIYCYG GNPFPKTNKK ANVNVQSRTC YMALDSSPTE DLGMVPTGTK CGTNKVCYKS 600
  601 LCLDISMYGT ENCSNKCNNR GVCNHELKCH CDPGWAPPYC DIQLSELHKM RKSVVIGVTT 660
  661 SLAILVLIII IGALVYNRNK ITEFRKKRPQ KGIHSSSGQC NPAFQPGSAK NSPRIAQPRI 720
  721 SQPTFLESSA TQACKPLRSA AMPCRPAPMP PKNAPQTRNE QIMKPPVPPS AISKNIYPPQ 780
  781 AKPLLPAAKP LPPSRPLPPL ASKAVTKSKS PPVPPVKPSG PQPVFTPPQV IQKVALKPPA 840
  841 WPR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle