YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LHPL2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCHVIVTCRS MLWTLLSIVA AFSELIAFLS TDWLVGFPRA PDAGFSPLGA TAAGEAYRPT  60
   61 LGIYGRCIRV PHYRRGVLCG PYAVHFGEIA SGFWQATAIF LAAGILLLCA VAFISIFTMC 120
  121 FQSIMKKSIF NVCGLLQAIA GLFLIVGLVL YPAGWGSQKV QLYCGPDSSP YRLGLCSAGW 180
  181 AFYTALAGTV LCFLCAVFSA QAEIATSSDK VQEEIQEGKS LICLL

Type	Start	End	Confidence
Cytoplasmic	1	10	0.92
Transmembrane Helix	11	31	0.91
Non-Cytoplasmic	32	95	0.88
Transmembrane Helix	96	121	0.87
Cytoplasmic	122	128	0.92
Transmembrane Helix	129	153	0.87
Non-Cytoplasmic	154	178	0.92
Transmembrane Helix	179	200	0.91
Cytoplasmic	201	225	0.97