YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM38B_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVFAFFNLN ELAFGLSKLP MFPYFDMAHY IISVMSLREQ PGALCVSQRS PLACWFSSML  60
   61 YCFGGAVLSA LMLADAPVAP LSNTTNLLLA TLMWYLVFYC PLDVVYSLAS LLPLRLVLTA 120
  121 MKEVTRTWKV LSGVSQAGSK YSDALFVMVA VGWAKGAGGG LISNFEQLVR GVWKPETNEL 180
  181 LKMSYPTKVT LLGAVVFSLQ QCRYLPIQTH HLTFIYTLFT VTNKTRMMLL GSSSHPLSSL 240
  241 ESFLYKTLFV RPLTDLSAEH THSKHNGSVP EPTTAQTHTK EAEASKKTN

Type	Start	End	Confidence
Cytoplasmic	1	51	0.69
Transmembrane Helix	52	74	0.89
Non-Cytoplasmic	75	94	0.78
Transmembrane Helix	95	118	0.83
Cytoplasmic	119	289	0.63