YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45387691, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	37	0.95
Transmembrane Helix	38	59	0.84
Cytoplasmic	60	112	0.88
Transmembrane Helix	113	133	0.75
Non-Cytoplasmic	134	158	0.82
Transmembrane Helix	159	179	0.87
Cytoplasmic	180	241	0.85
Transmembrane Helix	242	261	0.94
Non-Cytoplasmic	262	269	0.73
Transmembrane Helix	270	290	0.90
Cytoplasmic	291	304	0.81
Transmembrane Helix	305	329	0.80
Non-Cytoplasmic	330	341	0.85
Transmembrane Helix	342	362	0.93
Cytoplasmic	363	369	0.64
Transmembrane Helix	370	390	0.84
Non-Cytoplasmic	391	396	0.64
Transmembrane Helix	397	416	0.94
Cytoplasmic	417	435	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFPWSVCV CAALCFLPAV NADAVDASLL GGWQDVWLFR LFLNVLGYAT IIIPGYFLIS  60
   61 YFKRVNYLET GRGLCFPLIK TCVFGNESKT GLLDDASPAG RNESESSSSA RQAFKLIFCA 120
  121 AGLQVSYLTW GVLQERVMTR SYGSSEAEGS GERFRDSQFL VFMNRILALT VSGLWCVLFK 180
  181 QPRHGAPMYK YSFASLSNIL SSWCQYEALK FISFPTQVLA KASKVIPVML MGKIVSRKSY 240
  241 EYWEYLTAVL ISLGVSMFLL SSSTDKHPST VTTFSGVLIL AGYIVFDSFT SNWQDNLFKY 300
  301 KMSSVQMMFG VNLFSCLFTV GSLLEQGAFF NSLAFMTRHS EFAFHAVLLS VCSAFGQLFI 360
  361 FFTIAQFGAA VFTIIMTLRQ ALAILLSCFL YGHPVSLTGG LGVGVVFLAL FLRIYARSRV 420
  421 KKSTKRPAQT PVQKV