YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LIAS_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALISRSCGA ASRYSSSHLF LPSKGAEAAN VYCNRLSTAA STSSSSSPSP STHNDRKKDL  60
   61 REDGLNLQDF ISGELSEKSK WEEYRGNLKR EKGERLRLPP WLKTEIPIGK NYNKLKNTLR 120
  121 ELNLHTVCEE ARCPNIGECW GGGEYATATA TIMLMGDTCT RGCRFCSVKT ARRPPPLDPD 180
  181 EPYNTAKAIA AWGLDYVVLT SVDRDDIPDG GAEHFAKTVS NIKERNSKIL VECLTPDFRG 240
  241 DLAAVEKIAL SGLDVYAHNV ETVRELQRHV RDPRANFDQS LSVLRHAKKV KSSVLTKTSI 300
  301 MLGLGETDAQ IQATLTELRD SGVDCLTLGQ YMQPTKRHLK VEEYVTPEKF AFWEKVGQEM 360
  361 GFIYTASGPL VRSSYKAGEF FLKNLLEKRK TEETTATAE

Type	Start	End	Confidence
Signal Peptide	1	28	0.58
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	399	0.99