YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UNC50_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPTSSPQIH RNGSLSERDA ARHTAGAKRY KYLRRLLHFR QMDFEFAVWQ MLYLFTSPQK  60
   61 VYRNFHYRKQ TKDQWARDDP AFLVLLSIWL CVSTVGFGLV LDMGFVETLT LLLWVVFIDC 120
  121 IGVGLLISTL MWFVTNKYLM KHPNRDYDVE WGYAFDVHLN AFYPLLVILH FLQLFFINHV 180
  181 VVISSDWFLG YFVGNTMWLI AIGYYVYITF LGYSALPFLK NTVVLLYPFA LLGLLYVLSI 240
  241 SLGWNFTKGL CWFYKHRVQ

Type	Start	End	Confidence
Cytoplasmic	1	80	0.72
Transmembrane Helix	81	101	0.93
Non-Cytoplasmic	102	110	0.46
Transmembrane Helix	111	135	0.90
Cytoplasmic	136	156	0.55
Transmembrane Helix	157	182	0.76
Non-Cytoplasmic	183	187	0.50
Transmembrane Helix	188	213	0.78
Cytoplasmic	214	222	0.44
Transmembrane Helix	223	244	0.90
Non-Cytoplasmic	245	259	0.54