YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|182891212, gi...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSSSVSPA GGRGSGSVRL VSPLGCPLTA LIDAAVEYLM VKKDFHAALA TCEKGLESLD  60
   61 SFAEQEESCF KHAELRSAFT IIGVQALAEL NQWRTVLSWV LQQYGETENI PAKIIQMCIL 120
  121 LYVKVGERAV MKEAVCDWLH CSGNASQSGF STVAELYFLH ILLPMGHVTE ALEMLESDVG 180
  181 LVAFTDEQRQ AARSLVDDQN QKNASSSSSS SSNTNSDSVD VMETSSVSKQ GRLTLRLNSI 240
  241 IKLLSRGLSV ASVRIRSISL RRVFLALMLL YLLIARLDPA LPSALPWLLR LHGLLQQMFN 300
  301 TMFGPYYKAH NRS

Type	Start	End	Confidence
Cytoplasmic	1	257	0.65
Transmembrane Helix	258	280	0.68
Non-Cytoplasmic	281	313	0.55