YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NDC1_DANRE
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSMKQNCWF IRKVVIWRAV ASIAWSVLLL PITTAVFVLL SRFSLFHPIQ WISDCTNLLT  60
   61 ASSTIFSLMV LCAVVLITGF FNLEFYTLVP SIPCSRVALL GTVLHPLQCV HSLVYSSMGM 120
  121 LVMWCASVII SGRYSTLGTP CMQNESGDVL TCLNEYHLFL LLAGAFMGYS HSFLGVVKNM 180
  181 YYVSFQPIQQ YKYPQFKGCL PMLLKCSVIQ SLYSTRNFAA LYFFFGYVPR AWISSTLNLP 240
  241 IDSSLQPLDS LTGLLDFSLL YHLSISGTFL YFTWYLTVLI FRIYATEAYS FPVQSTFSED 300
  301 AERCLPKVVG EKSTLVMKFL ALQDLALLSQ HSPSRRQEVF SLSQPGGHPH NWNAISGECL 360
  361 CLLRDLTQRL VAHQDAVASN GRVKSQSASS DTRSASSSSS VLSGMEDVPE TPRPTVPLRT 420
  421 PGSVFKSSVG GMHSSLTAPF TPDVDSPFCS PAIRRLVGQQ DPQSPWFGTV QSPHIMRRGP 480
  481 KLWSASTESQ SNGSPPASPA IAPSPPAANK KPSFLAQWLQ NRKEQVKSFL AKRVLIVYLF 540
  541 NKLPEASSQA LFADSQAHIW ALQGLSHLVA ASFSEDQFGV VQTTLPSILS SLVVLLEAVD 600
  601 RHFKLPHASS KPARTVCSMG DSTYKTLRFA LRAALKTAIY KITTTFGEHL NAVNISTEHR 660
  661 KRLQQFLEFK E

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle