YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADA2C_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNLSYASEE DTYTDTDFTP SGNSTNSTSY SPATIIGLAG LVSFLILFTI VGNVLVVIAV  60
   61 LTSRALKPPQ NLFLVSLASA DILVATLIIP FSLANELMGY WFFGEVWCNI YLALDVLFCT 120
  121 SSIVHLCAIS LDRYWSVTQA VEYNLKRTPR RVKGMIVVVW LISAVISFPP LISMDRNTVD 180
  181 ERRPMCQLND HTWYILYSSI GSFFAPCVIM ILVYIRIYQV AKTRTRNMSE KRRDPDGGSG 240
  241 TPRLENGLSR EDSRRENGHC SSSPGERKPA EDNPDADLED SSSSDEKAKR SQNETAPSKK 300
  301 DRRSSRKNSS SSKHSSRKSR ASSKSLDLFS SRRKRRNTIS RKKISQAREK RFTFVLAVVM 360
  361 GVFVVCWFPF FFSYSLYGIC REPCAIPDPL FKFFFWIGYC NSSLNPVIYT IFNQDFRRAF 420
  421 QKILCKSWKR SF

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.96
Transmembrane Helix	35	61	0.87
Cytoplasmic	62	71	0.87
Transmembrane Helix	72	94	0.91
Non-Cytoplasmic	95	109	0.89
Transmembrane Helix	110	131	0.90
Cytoplasmic	132	151	0.92
Transmembrane Helix	152	172	0.91
Non-Cytoplasmic	173	193	0.93
Transmembrane Helix	194	218	0.90
Cytoplasmic	219	351	0.99
Transmembrane Helix	352	372	0.96
Non-Cytoplasmic	373	392	0.91
Transmembrane Helix	393	413	0.89
Cytoplasmic	414	432	0.93