YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18858513, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGDLLQPCG MKPVRLGEAV VDLLIQRAHN GTERAQDNAC GATATILLLL LCLLLAIRHH  60
   61 RPHKSHIPGP SFFFGLGPIV SYCRFIWSGI GTASNYYNSK YGDIVRVWIN GEETLILNRS 120
  121 SAVYHVLRKS LYTSRFGSKL GLQCIGMHEQ GIIFNSNVAL WKKVRAFYAK ALTGPGLQRT 180
  181 MEICTTSTNS HLDDLSQLTD AQGQLDILNL LRCIVVDVSN RLFLGVPLNE HDLLQKIHKY 240
  241 FDTWQTVLIK PDVYFRLDWL HKKHKRDAQE LQDAITALIE QKKVQLAHAE KLDHLDFTAE 300
  301 LIFAQSHGEL SAENVRQCVL EMVIAAPDTL SISLFFMLLL LKQNPDVELK ILQEMDSVLA 360
  361 GQSLQHSHLS KLQILESFIN ESLRFHPVVD FTMRRALDDD VIEGYNVKKG TNIILNVGRM 420
  421 HRSEFFSKPN QFSLDNFQKN VPSRFFQPFG SGPRSCVGKH IAMVMMKSIL VALLSRFSVC 480
  481 PMKACTVENI PQTNNLSQQP VEEPSSLSVQ LILRNTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.48
Transmembrane Helix	39	59	0.82
Cytoplasmic	60	66	0.41
Transmembrane Helix	67	88	0.59
Non-Cytoplasmic	89	517	0.73