YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31418870, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHYEVEILD AKTKDKLCFL DKVEPNATIG EIKSMFHKSH PQWYPARQSI RLDPKGKSLK  60
   61 DEDVLQHLPV GTTATFYFRD LGAQISWVTV FLTEYAGPLL IYLMFYFRVP FIYAPKYDFT 120
  121 TSKHWVVHLA CMCHSFHYVK RLLETLFVHR FSHGTMPLRN IFKNCTYYWG FAAWMAYYIN 180
  181 HPLYTPPIYG EQQIRLALTV FLFCQIGNFS IHIALRNLRP PGSKTRKIPY PTKNPFTWIF 240
  241 LLVSCPNYTY ELGSWLGFTL MTQCLPVAFF TLVGFIQMTV WAKGKHRSYL KEFRDYPTLR 300
  301 SPILPFIL

Type	Start	End	Confidence
Cytoplasmic	1	84	0.90
Transmembrane Helix	85	106	0.80
Non-Cytoplasmic	107	123	0.68
Transmembrane Helix	124	139	0.75
Cytoplasmic	140	159	0.87
Transmembrane Helix	160	179	0.84
Non-Cytoplasmic	180	193	0.81
Transmembrane Helix	194	215	0.92
Cytoplasmic	216	233	0.91
Transmembrane Helix	234	252	0.88
Non-Cytoplasmic	253	258	0.70
Transmembrane Helix	259	281	0.88
Cytoplasmic	282	308	0.96