YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1805660, gi\|1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRDGNVAVM PPRRTAVALL ALCGLLAVGD ALKCNCTACE STGYVCETDG ACMASTSYIN  60
   61 GQEEQQVRIC IPRVSLVPPG QPIYCLSAKG LLNTHCCYTD FCNSINLQIP NGIPDGKGGS 120
  121 WGPVELVAVI AGPVFLFCLL LIVGVLLFQH HQRNYNHRQR LDVEDPSCDH LYLAKDKTLQ 180
  181 DLIFDLSTSG SGSGLPLFVQ RTVARTIVLQ EIIGKGRFGE VWRGRWRGGD VAVKIFSSRE 240
  241 ERSWFREAEI YQTIMLRHEN ILGFIAADNK DNGTWTQLWL VSDYHEHGSL FDYLNHYSVT 300
  301 IEGMIKLSLS AASGLAHLHM EILGTQGKPG IAHRDLKSKN ILVKKNGIFA IADLGLAVRH 360
  361 ESITDTIDIA PNQRVGTKRY MAPEVLDETI NMKHFDSFKC ADIYALGLVY WEIARRCNAG 420
  421 GIHEDYKLPY YDLVPSDPSI EEMRKVVCDQ RLRPKWPNWW QSYEALRVMG KIMRECWYAN 480
  481 GAARLTALRI KKTLSQLSVQ EDIKI

Type	Start	End	Confidence
Signal Peptide	1	31	0.91
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	128	0.92
Transmembrane Helix	129	148	0.63
Cytoplasmic	149	505	0.53