YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18858781, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSGRPRTS SFAEPPGVPG AAAAAAGSAV AGGSSSGKTG GAQASGGSSS GFGNLKLGRD  60
   61 SGKVTTVVAT PGQGPDRPQE VSYTDIKVIG NGSFGVVYQA RLIDSQEMVA IKKVLQDKRF 120
  121 KNRELQIMRK LDHCNIVRLR YFFYSSGEKK DEVYLNLVLD FVPETVYRVA RHFNKSKTTI 180
  181 PIIYVKVYMY QLFRSLAYIH SQGVCHRDIK PQNLLVDPDT AVLKLCDFGS AKQLVRGEPN 240
  241 VSYICSRYYR APELIFGATD YTSNIDIWSA GCVLAELLLG QPIFPGDSGV DQLVEIIKVL 300
  301 GTPTREQIRE MNPNYTEFKF PQIKAHPWTK VFKPRTPPEA ISLCSRLLEY TPVTRLSPLE 360
  361 ACAHAFFDEL RQPNARLPNG RELPQLFNFS PVELSIQPQL NSILIPPHAR SQTTPASHEG 420
  421 SGSDGPAQSS SAPGPLSNNT

Type	Start	End	Confidence
Signal Peptide	1	36	0.89
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	440	0.99