YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSG1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGSNFY IPMSNRTGLV RSPYDYTQYY LAEPWKFKAL AFYMFLLIIF GFPINVLTLV  60
   61 VTAQHKKLRQ PLNYILVNLA FAGTIMVIFG FTVSFYCSLV GYMALGPLGC VMEGFFATLG 120
  121 GQVALWSLVV LAIERYIVVC KPMGSFKFSA NHAMAGIAFT WFMACSCAVP PLFGWSRYLP 180
  181 EGMQTSCGPD YYTLNPEYNN ESYVMYMFSC HFCIPVTTIF FTYGSLVCTV KAAAAQQQES 240
  241 ESTQKAEREV TRMVILMVLG FLFAWVPYAS FAAWIFFNRG AAFSAQAMAV PAFFSKTSAV 300
  301 FNPIIYVLLN KQFRSCMLNT LFCGKSPLGD DESSSVSTSK TEVSSVSPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.98
Transmembrane Helix	39	62	0.91
Cytoplasmic	63	73	0.88
Transmembrane Helix	74	96	0.90
Non-Cytoplasmic	97	113	0.72
Transmembrane Helix	114	138	0.81
Cytoplasmic	139	152	0.86
Transmembrane Helix	153	174	0.92
Non-Cytoplasmic	175	207	0.93
Transmembrane Helix	208	230	0.86
Cytoplasmic	231	252	0.88
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	286	0.81
Transmembrane Helix	287	309	0.82
Cytoplasmic	310	349	0.93