YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|41393107, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.88
Transmembrane Helix	99	122	0.80
Non-Cytoplasmic	123	131	0.59
Transmembrane Helix	132	150	0.93
Cytoplasmic	151	180	0.80
Transmembrane Helix	181	204	0.88
Non-Cytoplasmic	205	256	0.86
Transmembrane Helix	257	278	0.90
Cytoplasmic	279	288	0.92
Transmembrane Helix	289	311	0.88
Non-Cytoplasmic	312	345	0.87
Transmembrane Helix	346	366	0.75
Cytoplasmic	367	377	0.74
Transmembrane Helix	378	398	0.81
Non-Cytoplasmic	399	417	0.58
Transmembrane Helix	418	452	0.79
Cytoplasmic	453	473	0.79
Transmembrane Helix	474	499	0.92
Non-Cytoplasmic	500	739	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHVTVSEEP SATLMYHVER PIFSEAYIDS ELLHKRKKTP KPYKLRVAEH LCCSSEKVKS  60
   61 VVFGFLPILT WLPSYPLKEY LFGDIVSGIS TGVMQLPQGL AYAMLAAVPP VFGLYSSFYP 120
  121 VLLYTFFGTS KHISIGTFAV ISLMIGGVAV REAPDSMFMV NGTNSSLVVN IEARDSRRVE 180
  181 VVVALTTLVG IIQFVLGLLR FGFLAIYLTE PLVRGFTTAA AVHVSVSQLK YLLGVKTARF 240
  241 NGPLSVVYSL DAVLRNIADT NIVTLIIGLG CTVFLYIIKQ LNERFKKKLL IPIPGEIIVV 300
  301 IVSTGISYGM LMSENYGVDV VGKIPTGLLP PKVPDFSVFP NLFADAVPIA VVGFSITISL 360
  361 AKTFALKYGY SVDGNQELIA LGLCNFVSSF FHTFVVTASM SRSLVQESTG GHTEIAGLLA 420
  421 SLLVLLVVVA IGFVFQPLPT TVLAAIIMVN LLGMFKQTRD IPVLWRKSKI ELAIWLVSFF 480
  481 ASVLLGLDYG LAVAMAFAIL TVIYRTQRPK NVVLGQIPDT GLYFDVDEYE EAEECSGIKI 540
  541 FQSNSSIYFA NSELYVKALK AKTGIDPEKL LDAKKLQLKY AKRDTEGTKT VNQGSLLKKN 600
  601 AVVLLDMELG VTHEVLNGPQ KPKHVHTNGQ MTEKHIESES EDEFFLQRLT PIHSVILDFT 660
  661 PVNFIDSVGA KTIKSVIKEY ATVDVKVVLA GCSRTLLSEL RTLQFFSEPV TPDLIFPTIH 720
  721 DAVLQCKRWR DLPVHPNIH