YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16973455, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFTSLLTDY RMTTRERWRV YKRVSLMFLL AVVTLTVVHR GNLTSLQDFQ TDHIERQTRM  60
   61 ELTADSEVQK KATVNFWKTI QRLQSTTQGS RITLKQAPST WDVDSSNCSI NLFNSSQEWF 120
  121 TGPEDNFKQF LLYRHCRYFP MLINHPEKCS GEIDLLIVIK SVITQFDRRE VIRKTWGKEQ 180
  181 VLNGKRIKTL FLLGKSSNLE ERANHQKLLE YEDYIYGDTL QWDFMDSFFN LTLKEIHFLK 240
  241 WFSSYCPKTQ YIFKGDDDVF VSVPNIFEYL EISGNLKDLF VGDVLFKAKP IRKEQNKYYI 300
  301 PQALYNKTLY PPYAGGGGFL MDGALARKLY GACETLELYP IDDVFLGMCL EVLQVTPIKH 360
  361 NAFKTFGLVK NKTSRLNREP CFFKSLIVVH KLLPPDLMSM WKLVNSDLIC SQKIDFLD

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	39	0.90
Non-Cytoplasmic	40	418	0.99