YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39752659, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRCSNPLL YLFNYTTVRY VVTQNKIVGL LYRFFQLIIM CYLIGWVFVT KKGYQVVDDT  60
   61 IESSVVTKVK GIARVNTTFS DLWGPEEYVI PDHGGKFLFV VTNFIETPNQ TLTTCPESPS 120
  121 VPFSTCTHDD NCTEGEAVRA GNGIKTGTCR KTDGNETNTC EIYGWCPTEK PRREAATMLR 180
  181 EAENFTVYIR NFIKFSQFNL SKTNILKEGY PSYIKTCLHD EIHHPYCPVF RLGDIVSKAG 240
  241 YRFEEVAAKG GSIGIVIKWS CDFDMDTSDC HPQYSFMSMG SSTPVTAGYN FRFARYSSDA 300
  301 AGRTHRNLYK VYGFQLNVMV FGTASQFSII HTIINVASVL TLMAVGSYIC DVILLFMVKK 360
  361 KYAKFESLIK ADKEIALQKM PDHSKRKFSH

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.50
Transmembrane Helix	30	49	0.49
Cytoplasmic	50	310	0.56
Transmembrane Helix	311	330	0.63
Non-Cytoplasmic	331	335	0.60
Transmembrane Helix	336	358	0.84
Cytoplasmic	359	390	0.94