YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39752665, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCSAYCFHC LFDHGTPVIL VVSSKKVGFI FRLLQLCIIV YVAVYVCWYK RAYQERDSVI  60
   61 SSVSTKVKGN ILTNSSAFGT HVWDTSEYVI PPQGENSFFV LTNAIVTQGQ TQGSCPEIPS 120
  121 EFTNCQSDSD CKEGLKEIRG NGVQTGKCVQ YSGKCVQYSE TIKTCEVLSW CPLENDTVIP 180
  181 KPALLSAAED FTVLIKNNIQ YPKFKFRKRN ILRHINSTYL KNCTFNHKTD PHCPVFRLGD 240
  241 IVTESGEDFS IMALKGGIIG IFIDWSCDLD FNERFCVPKY SFRRLDNKNP ENNVAPGYNF 300
  301 RYAKYYMNNE NTETRTLIKA FGIRFDIIVF GMAGKFNIVP TIVNVGAALA LLNLMKVICD 360
  361 WFMLNCLSDS EYYSKHKFKH LKPKDESETF SFTDQSSYGT P

Type	Start	End	Confidence
Cytoplasmic	1	28	0.56
Transmembrane Helix	29	49	0.67
Non-Cytoplasmic	50	401	0.81