YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39752657, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCLEFLKDF FLGFWDYETP KVMVVKDKKL GVIYRAVQFL VITYFIWYVF ISQKAYQETE  60
   61 TRPESSVYTE MRGVALLGDA VQDTTECVRP SEGGDVISTI LRKEVTHDQT QGTCAEHYSV 120
  121 ANANCTRDSD CIQGESDFDG HGQRTGRCIR YYNYTFKTCE IKSWCPIEEY AVVREPALEQ 180
  181 AINFTVFIKN AIHFPKFKVL RGNIKPNKPK KLLRCHYHPE TNPYCPVFSL GFIAAQAREK 240
  241 FSELCRTGGI IGVFINWKCD FDVDPSACIP TYSFRRLDMR KNLPSSGYYY RFAKYYHKDG 300
  301 VEYRSLIKAY GIRLDVIVHG HAGRFSLIPT IINTVTAMTS VGICSIICDW IMLTFIDKNE 360
  361 VFSEKKFDDV SKQPSQPITT DFTLTSYGST HSDLSDGVPL

Type	Start	End	Confidence
Cytoplasmic	1	30	0.83
Transmembrane Helix	31	51	0.77
Non-Cytoplasmic	52	400	0.90