YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39752653, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRMKSAIKK TFSNFFFEYE TPREVLVKNR RVAIVCRIIQ LGVLAYIIGW VFMYEKGYQT  60
   61 VDNAIGSVFT KMKGVSFTNI SGQERIWDVA DYVFPEQGDS SFVVMTNFIP TIGQVQGKCP 120
  121 ELPDGKNKCT NDSDCDDSKY KRTGNGHMTG RCMNKTQTCE IYSWCPVEDD RKIPDPPILL 180
  181 TAENYTLFIK NSITFPQFDV VRSNLVEGID QNYINNCVYH PKTAPLCPIF RLGDIVERYG 240
  241 FSFSEIARVG GAIGVLIDWD CNLDLSIRFC KPKYEFYGLY GTGKNDQVDK ASLGYNFRFA 300
  301 KYYVENSVQK RTLMKVFGVR IDIIVHGLAG KFDIIPTLTA IGSGVGIFGV ATVVCDLLLL 360
  361 YILPKKNFYK TMKFKDAEIC EETPALPQTQ EDSESQKE

Type	Start	End	Confidence
Cytoplasmic	1	32	0.75
Transmembrane Helix	33	54	0.62
Non-Cytoplasmic	55	339	0.86
Transmembrane Helix	340	363	0.80
Cytoplasmic	364	398	0.86