YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18175506, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCYECCMRC LGGVPYVSLA ATLLCFSGIA LFCGCGHQAL TESERLIETY FARDNQDYYT  60
   61 LVYLIEYFQY IIYGLASFFF LYCIVLLAEG FYTTSAVRQS LGEFRSTVCG RCLSTTFIVI 120
  121 TYFLVVVWLL VFSLSAFPVY FFYNMAKTCQ TINFLSETPS SINQLCIDAR QYGLLPWTAI 180
  181 PGKACGMTLS NVCKTREFSL TYNLYIAAFA GAGMTVLALL TYTVSTTYNF AVLRYLGRKG 240
  241 ISPRC

Type	Start	End	Confidence
Cytoplasmic	1	15	0.82
Transmembrane Helix	16	40	0.80
Non-Cytoplasmic	41	69	0.96
Transmembrane Helix	70	92	0.91
Cytoplasmic	93	111	0.87
Transmembrane Helix	112	134	0.90
Non-Cytoplasmic	135	205	0.89
Transmembrane Helix	206	230	0.85
Cytoplasmic	231	245	0.78