YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22074643, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSEWPTLS PNLSLSQANL SDESSRPKTS ASAACEQVHI APEVFLTLGL ISLLENILVI  60
   61 LAIVKNKNLH SPMYFFVCSL AVADMLVSVS NAWETIVIHL LANRSLVIED HFIRQMDNVF 120
  121 DSLICISVVG SMWSLLAIAV DRYVTIFYAL RYHNIMTVRR AGILIGSIWT FSTSCGIIFI 180
  181 IYSDTKPVVV CLVAMFFAML LMMASLYSHM FLLARSHVKR MAALPGYNAN IRQRASMKGA 240
  241 VTLTILLGIF IVCWAPFFLH LILMISCPRN IYCVCFMSHF NMYLILIMCN SVIDPLIYAL 300
  301 RSQEMRKTFK EIVCCEGLRS FCNMVSKY

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.66
Transmembrane Helix	44	64	0.69
Cytoplasmic	65	72	0.81
Transmembrane Helix	73	93	0.86
Non-Cytoplasmic	94	119	0.89
Transmembrane Helix	120	140	0.89
Cytoplasmic	141	160	0.83
Transmembrane Helix	161	182	0.95
Non-Cytoplasmic	183	189	0.82
Transmembrane Helix	190	213	0.91
Cytoplasmic	214	239	0.95
Transmembrane Helix	240	263	0.89
Non-Cytoplasmic	264	278	0.87
Transmembrane Helix	279	300	0.88
Cytoplasmic	301	328	0.97